JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDAH2_chr6_31722040_31734299	0/1	c0001	858	370	83	79	154	18	35	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0002	858	6	3	3	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0003	858	4	0	0	1	0	3	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0004	858	3	0	0	3	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0005	858	2	0	2	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0006	858	1	1	0	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	c0007	858	1	1	0	0	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDB1_chr11_61294451_61338105	1/1	c0001	3423	167	80	30	29	6	20	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0002	3423	6	2	3	0	1	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0003	3423	2	2	0	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0004	3423	1	1	0	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0005	3423	1	0	0	0	1	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0006	3423	1	0	0	1	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0007	3423	1	0	1	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	c0008	3423	1	1	0	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB2_chr11_47209974_47244217	1/1	c0001	1284	349	85	74	129	16	43	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0002	1284	4	4	0	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0003	1284	2	2	0	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0004	1284	2	0	2	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0005	1284	1	0	0	0	0	1	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0006	1284	1	1	0	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	c0007	1284	1	0	0	1	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDC_chr7_50453442_50570405	0/1	c0001	1443	310	52	67	146	14	30	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0002	1443	14	3	0	11	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0003	1443	13	11	0	0	0	2	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0004	1443	5	5	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0005	1443	5	5	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0006	1443	4	3	1	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0007	1443	4	2	0	0	0	2	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	1/0	c0008	1443	1	0	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0009	1443	1	0	0	1	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0010	1443	1	0	0	1	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDHD1_chr14_53031755_53158323	0/0	c0001	2709	162	20	27	83	10	22	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	1/1	c0002	2703	45	30	7	1	2	3	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0003	2703	28	15	1	11	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0004	2709	24	3	7	14	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0005	2709	9	8	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0006	2709	6	4	2	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0007	2709	5	0	4	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0008	2709	2	0	1	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0009	2703	2	1	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0010	2715	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0011	2709	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0012	2703	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0013	2703	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0014	2709	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0015	2709	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	c0016	2709	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323