JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDHD2_chr8_38226585_38267836	1/1	c0001	2136	167	49	25	65	9	17	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0002	2136	81	1	17	55	5	3	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0003	2136	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0004	2136	1	1	0	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0005	2136	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0006	2136	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0007	2136	1	1	0	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	c0008	2136	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDI1_chr11_104031640_104044196	1/0	c0001	1191	225	56	33	101	9	25	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/1	c0002	1191	150	0	39	89	6	15	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0003	1191	14	6	1	4	1	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0004	1191	13	4	0	7	0	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0005	1191	7	7	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0006	1191	6	0	0	6	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0007	1191	5	0	0	5	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0008	1191	5	4	1	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0009	1191	4	4	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0010	1191	3	3	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0011	1191	3	3	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0012	1191	2	2	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0013	1191	2	2	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0014	1191	2	0	2	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0015	1191	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0016	1191	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0017	1191	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0018	1191	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0019	1191	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0020	1191	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	c0021	1191	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI2_chr1_15612458_15674044	1/1	c0001	1200	177	49	36	67	8	15	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	c0002	1200	91	39	21	16	4	11	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	c0003	1200	1	0	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	c0004	1200	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	c0006	1200	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDIAS_chr11_82896736_82939659	1/1	c0001	2997	138	17	24	79	4	12	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0002	2997	116	23	25	50	3	15	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0003	2997	44	27	11	1	2	3	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0004	2997	39	26	9	0	0	4	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0005	2997	16	0	0	12	1	3	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0006	2997	4	0	0	4	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0007	2997	2	2	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0008	2997	2	0	0	0	0	2	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0009	2997	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0010	2997	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0011	2997	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0012	2997	1	0	0	0	0	1	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0013	2997	1	0	0	1	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0014	2997	1	0	1	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	c0015	2997	1	0	0	1	0	0	copy fasta	DDIAS	chr11	82896736	82939659