JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDIT3_chr12_57511593_57525514	1/1	c0001	510	263	73	56	94	11	27	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	c0002	510	61	18	11	24	1	7	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	c0003	510	1	0	1	0	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	c0004	510	1	1	0	0	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT4L_chr4_100180870_100195468	1/0	c0001	582	402	77	67	209	7	41	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/1	c0002	582	30	12	9	2	4	2	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	c0003	581	16	1	7	0	3	5	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	c0004	582	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	c0005	582	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	c0006	582	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	c0007	582	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4_chr10_72268924_72281036	1/1	c0001	699	342	89	68	125	10	48	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	c0002	699	3	3	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	c0003	699	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	c0004	699	1	0	0	1	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	c0005	699	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDN_chr12_48990149_49004375	0/0	c0001	2136	166	51	25	67	6	17	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	1/1	c0002	2136	160	24	31	72	9	22	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0003	2136	9	7	2	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0004	2136	4	0	0	4	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0005	2136	4	2	2	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0006	2136	2	1	0	0	1	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0007	2136	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0008	2136	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0009	2136	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0010	2136	1	1	0	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0011	2136	1	0	0	0	0	1	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0012	2136	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	c0013	2136	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDOST_chr1_20646777_20666369	0/1	c0001	1320	221	69	45	74	11	21	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	1/0	c0002	1320	189	19	28	113	7	21	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0003	1320	15	2	1	9	0	3	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0004	1320	11	0	0	11	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0005	1320	4	0	0	4	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0006	1320	4	4	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0007	1320	3	0	0	3	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0008	1320	1	0	0	0	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0009	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0010	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0011	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0012	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0013	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0014	1320	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0015	1320	1	0	1	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	c0016	1320	1	0	1	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDO_chr6_110386784_110420575	1/1	c0001	1026	365	58	71	181	11	42	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0002	1026	16	2	9	0	3	2	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0003	1026	15	13	2	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0004	1026	14	14	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0005	1026	4	4	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575