JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDO_chr6_110386784_110420575	0/0	c0006	1026	3	3	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0007	1026	2	0	0	0	0	2	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0008	1026	1	1	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0009	1026	1	1	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	c0010	1026	1	0	0	1	0	0	copy fasta	DDO	chr6	110386784	110420575
DDR1_chr6_30879519_30905156	0/0	c0001	2742	175	41	42	70	7	15	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/1	c0002	2742	135	9	20	82	6	17	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0003	2742	52	14	4	30	1	3	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0004	2742	32	18	6	1	1	6	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0005	2742	11	0	2	8	0	1	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0006	2742	5	5	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0007	2742	3	2	1	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0008	2742	2	0	0	0	0	2	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0009	2742	2	0	0	2	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0010	2742	2	0	1	0	0	1	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0011	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0012	2742	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0013	2742	1	0	0	0	1	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0014	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0015	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0016	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0017	2742	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0018	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0019	2742	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0020	2721	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0021	2742	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	c0022	2742	1	0	0	0	0	1	copy fasta	DDR1	chr6	30879519	30905156
DDR2_chr1_162627464_162792405	0/0	c0001	2568	152	38	23	73	5	13	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	1/1	c0002	2568	138	40	25	51	5	15	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0003	2568	2	0	0	2	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0004	2568	2	0	0	2	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0005	2568	2	2	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0006	2568	2	0	0	0	0	2	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0007	2568	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0008	2568	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0009	2568	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	c0010	2568	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDRGK1_chr20_3185350_3209682	1/1	c0001	945	412	90	68	198	12	42	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0002	945	19	0	9	0	6	4	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0003	945	1	0	0	1	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0004	945	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0005	945	1	0	1	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0006	945	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0007	945	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0008	945	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	c0009	945	1	0	0	1	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDTL_chr22_23961888_23977556	0/0	c0001	405	275	53	53	125	15	29	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0002	405	34	27	5	1	1	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0003	403	9	0	0	8	0	1	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0004	405	2	1	1	0	0	0	copy fasta	DDTL	chr22	23961888	23977556