JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDTL_chr22_23961888_23977556	0/0	c0005	405	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0006	405	1	0	1	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0007	405	1	1	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	c0008	405	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDT_chr22_23966370_23979441	0/0	c0001	357	275	49	53	129	15	29	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	c0002	357	34	26	5	2	1	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	c0003	357	4	0	1	0	2	1	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	c0004	357	1	0	1	0	0	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	c0005	357	1	1	0	0	0	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	c0006	341	1	0	0	1	0	0	copy fasta	DDT	chr22	23966370	23979441
DDX10_chr11_108660069_108945927	1/1	c0001	2628	282	80	37	129	8	26	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0002	2634	24	3	3	17	0	1	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0003	2628	2	2	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0004	2628	2	2	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0005	2628	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0006	2628	1	0	0	0	0	1	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0007	2628	1	0	0	1	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0008	2628	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0009	2620	1	0	1	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0010	2628	1	0	0	1	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0011	2628	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0012	2628	1	0	1	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0013	2628	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX11_chr12_31068860_31109799	0/0	c0001	2721	138	23	30	71	6	8	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	1/1	c0002	2721	88	21	23	28	4	10	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0003	2721	54	0	7	42	1	4	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0004	2721	42	8	2	29	0	3	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0005	2721	19	5	2	3	1	8	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0006	2721	14	3	5	0	2	4	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0007	2721	10	3	3	4	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0008	2721	8	0	0	8	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0009	2721	4	2	2	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0010	2724	4	4	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0011	2721	3	3	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0012	2721	3	0	0	3	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0013	2721	3	3	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0014	2721	2	2	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0015	2721	2	0	0	2	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0016	2721	2	0	0	2	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0017	2721	2	0	2	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0018	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0019	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0020	2721	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0021	2721	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0022	2721	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0023	2721	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0024	2721	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0025	2721	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0026	2721	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799