JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX11_chr12_31068860_31109799	0/0	c0027	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0028	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0029	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0030	2734	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0031	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0032	2721	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0033	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0034	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0035	2721	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0036	2721	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	c0037	2721	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX17_chr22_38478438_38511311	1/1	c0001	2190	345	80	52	168	8	35	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0002	2190	9	9	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0003	2190	4	0	0	4	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0004	2190	2	0	0	2	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0005	2190	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0006	2190	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0007	2190	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	c0008	2190	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX18_chr2_117809691_117837377	0/1	c0001	2013	153	57	31	37	8	19	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0002	2013	124	3	18	85	4	14	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	1/0	c0003	2013	98	24	16	49	2	6	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0004	2013	6	0	3	0	2	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0005	2013	5	0	5	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0006	2013	5	0	1	0	0	4	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0007	2013	3	3	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0008	2013	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0009	2013	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0010	2013	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0011	2013	2	0	2	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0012	2013	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0013	2013	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0014	2013	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0015	2013	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0016	2013	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0017	2013	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0018	2013	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0019	2013	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0020	2013	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0021	2013	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0022	2013	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	c0023	2013	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX19A_chr16_70341903_70378383	1/0	c0001	1437	286	72	58	111	9	35	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/1	c0002	1437	97	2	20	67	2	5	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0003	1437	2	2	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0004	1437	1	0	0	1	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0005	1437	1	0	1	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0006	1437	1	0	0	1	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0007	1437	1	0	0	0	1	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0008	1437	1	0	1	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383