JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX19A_chr16_70341903_70378383	0/0	c0009	1437	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	c0010	1437	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19B_chr16_70294186_70340305	1/1	c0001	1440	304	44	71	144	12	31	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0002	1440	23	22	1	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0003	1440	2	2	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0004	1440	2	0	0	0	2	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0005	1440	2	2	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0006	1440	1	0	0	0	0	1	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0007	1440	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	c0008	1440	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX1_chr2_15586868_15636101	0/1	c0001	2223	194	63	35	67	5	23	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0002	2223	72	3	8	55	2	4	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	1/0	c0003	2223	72	14	24	17	4	12	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0004	2223	42	2	0	39	0	1	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0005	2223	2	0	0	2	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0006	2223	2	2	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0007	2223	2	2	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0008	2223	2	2	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0009	2223	1	0	1	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0010	2223	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0011	2223	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0012	2223	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0013	2223	1	0	0	0	1	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0014	2223	1	1	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0015	2223	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	c0016	2223	1	1	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX20_chr1_111750901_111773000	1/1	c0001	2475	183	14	34	105	6	22	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0002	2475	112	17	25	60	1	9	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0003	2475	56	41	6	1	4	4	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0004	2475	27	8	4	7	3	5	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0005	2475	7	0	0	7	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0006	2475	4	4	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0007	2475	4	4	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0008	2475	2	0	0	2	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0009	2475	2	2	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0010	2475	1	0	0	1	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0011	2475	1	0	1	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0012	2475	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0013	2475	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0014	2475	1	0	0	1	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0015	2475	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	c0016	2475	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX21_chr10_68951170_68990068	1/1	c0001	2352	339	74	52	162	10	39	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0002	2352	13	12	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0003	2352	3	2	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0004	2352	2	0	0	2	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0005	2352	2	2	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0006	2352	2	2	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0007	2352	2	0	1	0	0	1	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0008	2352	1	0	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068