JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX21_chr10_68951170_68990068	0/0	c0009	2352	1	0	0	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	c0010	2352	1	0	0	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX23_chr12_48824756_48857163	1/0	c0001	2463	168	41	35	64	5	22	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/1	c0002	2463	164	36	29	76	6	16	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	c0003	2463	9	9	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	c0004	2463	2	0	0	2	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	c0005	2463	2	0	0	0	1	1	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	c0006	2463	2	0	2	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	c0007	2463	1	0	0	0	0	1	copy fasta	DDX23	chr12	48824756	48857163
DDX24_chr14_94043287_94086202	0/0	c0001	2580	183	39	30	79	11	24	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0002	2580	111	25	25	46	6	9	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0003	2580	24	0	1	22	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0004	2580	11	11	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0005	2580	9	0	0	8	1	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0006	2580	6	6	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0007	2580	4	0	0	3	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0008	2580	4	4	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0009	2580	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0010	2580	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0011	2580	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0012	2580	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0013	2580	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0014	2580	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0015	2580	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0016	2580	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0017	2580	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0018	2580	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0019	2580	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0020	2580	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/1	c0021	2580	1	0	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0022	2580	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0023	2580	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	c0024	2558	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX25_chr11_125899508_125933843	0/0	c0001	1452	287	57	52	132	12	34	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	1/1	c0002	1452	147	28	20	79	4	14	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0003	1452	4	4	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0004	1452	4	4	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0005	1452	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0006	1452	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0007	1452	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	c0008	1452	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX27_chr20_49214416_49249073	1/0	c0001	2298	128	38	23	47	1	18	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0002	2298	84	7	19	37	7	14	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/1	c0003	2298	57	20	12	16	3	5	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0004	2298	51	7	12	26	1	5	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0005	2298	34	0	4	27	0	3	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0006	2298	11	11	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0007	2298	8	0	0	8	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0008	2298	3	3	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0009	2298	2	2	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073