JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX27_chr20_49214416_49249073	0/0	c0010	2298	2	0	0	2	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0011	2298	1	0	0	0	0	1	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0012	2298	1	1	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0013	2298	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0014	2298	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0015	2298	1	1	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	c0016	2298	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX28_chr16_68015916_68028232	0/1	c0001	1623	295	54	49	139	16	36	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0002	1623	69	27	8	25	1	8	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	1/0	c0003	1623	9	0	6	0	1	1	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0004	1623	5	0	5	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0005	1623	5	5	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0006	1623	2	2	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0007	1623	1	0	0	1	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0008	1623	1	1	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0009	1623	1	0	0	0	0	1	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0010	1623	1	0	0	1	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	c0011	1623	1	1	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX31_chr9_132587997_132674983	0/1	c0001	2241	245	55	53	99	10	27	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	1/0	c0002	2241	63	1	3	52	2	4	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0003	2241	40	6	13	18	1	2	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0004	2241	10	10	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0005	2241	9	9	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0006	2241	6	6	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0007	2241	5	1	3	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0008	2241	2	0	2	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0009	2241	2	1	0	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0010	2241	2	1	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0011	2241	2	0	1	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0012	2241	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0013	2241	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0014	2241	1	0	0	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0015	2241	1	0	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0016	2241	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0017	2241	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0018	2241	1	0	0	0	1	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0019	2241	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0020	2241	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0021	2241	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0022	2241	1	0	0	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0023	2241	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0024	2241	1	0	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	c0025	2241	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX39A_chr19_14403798_14424341	1/1	c0001	1284	376	80	78	157	14	45	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0002	1284	6	6	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0003	1284	4	4	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0004	1284	3	3	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0005	1284	1	0	0	1	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0006	1284	1	0	0	0	0	1	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	c0007	1284	1	1	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341