JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX39B_chr6_31525226_31547003	0/1	c0001	1287	390	79	77	174	17	42	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	c0002	1287	47	10	10	23	1	3	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	c0003	1287	4	2	1	0	0	1	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	c0004	1287	3	0	0	3	0	0	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	c0005	1287	1	1	0	0	0	0	copy fasta	DDX39B	chr6	31525226	31547003
DDX3X_chrX_41329162_41355274	1/1	c0001	1989	298	67	46	152	7	24	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	c0002	1989	2	0	2	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	c0003	1989	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3Y_chrY_12899868_12925478	1/1	c0001	1983	132	18	19	72	5	16	copy fasta	DDX3Y	chrY	12899868	12925478
DDX3Y_chrY_12899868_12925478	0/0	c0002	1983	1	0	1	0	0	0	copy fasta	DDX3Y	chrY	12899868	12925478
DDX41_chr5_177506577_177521961	1/0	c0001	1869	267	48	58	129	7	24	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/1	c0002	1869	131	41	22	41	8	18	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0003	1869	5	4	1	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0004	1869	3	2	1	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0005	1869	2	0	0	2	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0006	1869	1	1	0	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0007	1869	1	0	0	1	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0008	1869	1	0	0	1	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	c0009	1869	1	0	0	0	1	0	copy fasta	DDX41	chr5	177506577	177521961
DDX42_chr17_63769170_63824317	1/1	c0001	2817	319	78	50	143	16	30	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0002	2817	4	0	4	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0003	2817	3	3	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0004	2817	2	2	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0005	2817	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0006	2817	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0007	2817	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	c0008	2817	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX43_chr6_73389828_73422566	1/1	c0001	1947	181	56	29	80	1	13	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0002	1947	158	24	32	80	7	15	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0003	1947	39	1	14	24	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0004	1947	6	6	0	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0005	1947	4	0	0	4	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0006	1947	3	2	1	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0007	1947	1	1	0	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0008	1947	1	0	0	1	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	c0009	1947	1	0	0	1	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX46_chr5_134753779_134836121	1/1	c0001	3099	327	75	57	149	8	36	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0002	3099	4	3	1	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0003	3099	3	0	0	3	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0004	3099	2	2	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0005	3099	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0006	3099	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0007	3099	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0008	3099	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0009	3099	1	0	0	0	0	1	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	c0010	3099	1	0	0	0	0	1	copy fasta	DDX46	chr5	134753779	134836121
DDX47_chr12_12808346_12834981	1/1	c0001	1368	247	63	51	94	13	24	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0002	1368	184	21	26	109	5	23	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0003	1368	3	3	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0004	1368	2	2	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981