JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX47_chr12_12808346_12834981	0/0	c0005	1368	2	0	0	2	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0006	1368	2	0	0	2	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0007	1368	1	1	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0008	1368	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0009	1368	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0010	1368	1	1	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0011	1368	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0012	1368	1	0	1	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0013	1368	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0014	1368	1	0	0	1	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0015	1368	1	1	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	c0016	1368	1	0	0	0	0	1	copy fasta	DDX47	chr12	12808346	12834981
DDX49_chr19_18914715_18933630	1/1	c0001	1452	339	54	69	155	15	44	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0002	1452	10	8	0	0	1	1	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0003	1452	9	9	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0004	1452	8	5	3	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0005	1452	6	6	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0006	1452	4	0	0	4	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0007	1452	4	4	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0008	1452	2	0	2	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0009	1452	2	2	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0010	1452	2	1	0	0	0	1	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0011	1452	2	2	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0012	1452	2	0	0	2	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0013	1452	1	0	0	0	0	1	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0015	1452	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0016	1452	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0017	1452	1	0	0	0	0	1	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0018	1452	1	1	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0019	1452	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	c0020	1452	1	1	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX4_chr5_55733061_55822157	0/0	c0001	2175	141	38	25	67	2	9	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	1/1	c0002	2175	140	30	25	61	7	15	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0003	2175	41	0	7	30	2	2	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0004	2175	17	14	2	0	1	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0005	2175	2	2	0	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0006	2175	1	0	0	1	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0007	2175	1	1	0	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0008	2175	1	0	1	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0009	2175	1	1	0	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	c0010	2175	1	0	0	1	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX50_chr10_68896315_68951847	0/1	c0001	2214	195	48	26	89	9	22	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0002	2214	111	33	24	38	2	14	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	1/0	c0003	2214	7	0	3	0	1	2	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0004	2214	5	5	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0005	2214	3	3	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0006	2214	2	2	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0007	2214	2	0	2	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0008	2214	2	0	0	2	0	0	copy fasta	DDX50	chr10	68896315	68951847