JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX50_chr10_68896315_68951847	0/0	c0009	2214	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0010	2180	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0011	2214	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0012	2214	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0013	2214	1	0	0	1	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0014	2214	1	1	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	c0015	2214	1	0	1	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX51_chr12_132131594_132149319	0/1	c0001	2001	155	15	47	70	7	15	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0002	2001	67	33	7	22	3	2	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	1/0	c0003	2001	29	2	7	7	1	11	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0004	1965	9	7	2	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0005	2001	9	3	5	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0006	2001	8	8	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0007	2001	7	0	0	6	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0008	1965	6	0	1	5	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0009	2001	4	0	0	4	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0010	2001	4	4	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0011	2002	3	1	1	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0012	1965	3	3	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0013	2001	3	0	0	3	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0014	2002	2	1	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0015	2001	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0016	2001	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0017	2001	2	1	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0018	2001	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0019	2001	2	0	0	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0020	2001	2	0	1	0	1	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0021	1948	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0022	2001	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0023	2002	1	0	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0024	2001	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0025	2001	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0026	2001	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0027	2001	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0028	2001	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0029	2001	1	0	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0030	2001	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0031	2001	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0032	2001	1	0	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	c0033	2001	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX52_chr17_37604739_37648446	0/0	c0001	1800	237	32	50	117	7	31	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/1	c0002	1800	159	48	16	78	4	12	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0003	1800	3	1	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0004	1800	2	2	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0005	1800	2	0	1	0	1	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0006	1800	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0007	1800	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0008	1800	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0009	1800	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0010	1800	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446