JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX52_chr17_37604739_37648446	0/0	c0011	1800	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0012	1800	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	c0013	1800	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX53_chrX_22994960_23008589	1/1	c0001	1896	226	26	57	117	9	15	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0002	1896	65	0	0	47	2	16	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0003	1896	30	29	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0004	1896	16	15	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0005	1896	8	8	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0006	1896	2	0	0	2	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0007	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0008	1895	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0009	1896	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0010	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0011	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0012	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0013	1896	1	0	0	0	1	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0014	1896	1	0	0	0	0	1	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0015	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0016	1896	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	c0017	1896	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX54_chr12_113152173_113190478	1/1	c0001	2646	203	49	38	75	11	28	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0002	2646	34	0	0	33	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0003	2649	25	7	0	15	0	3	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0004	2646	5	5	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0005	2646	4	4	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0006	2646	4	0	1	0	0	3	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0007	2646	3	1	1	0	1	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0008	2646	3	3	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0009	2649	2	0	0	2	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0010	2646	2	2	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0011	2646	2	0	0	2	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0012	2649	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0013	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0014	2646	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0015	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0016	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0017	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0018	2646	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0019	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0020	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0021	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0022	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0023	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0024	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0025	2646	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0026	2646	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0027	2646	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0028	2646	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0029	2646	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	c0030	2646	1	0	0	0	0	1	copy fasta	DDX54	chr12	113152173	113190478