JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX55_chr12_123597099_123625943	1/1	c0001	1803	163	29	36	73	9	14	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0002	1803	40	14	13	2	2	9	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0003	1803	36	12	5	11	1	7	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0004	1803	19	18	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0005	1803	15	4	4	2	5	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0006	1803	5	5	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0007	1803	5	5	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0008	1803	4	4	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0009	1803	4	0	2	0	0	2	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0010	1803	3	0	0	3	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0011	1803	3	3	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0012	1803	3	0	3	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0013	1803	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0014	1803	1	0	0	0	1	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	c0015	1803	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX56_chr7_44560804_44578908	0/1	c0001	1644	217	56	39	82	9	30	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0002	1644	87	21	8	55	1	2	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	1/0	c0003	1644	74	9	22	26	5	11	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0004	1644	8	0	0	8	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0005	1644	5	4	1	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0006	1644	3	0	0	0	0	3	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0007	1644	3	1	2	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0008	1644	1	1	0	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0009	1644	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0010	1644	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0011	1644	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0012	1644	1	0	0	0	1	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0014	1644	1	1	0	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0015	1644	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	c0016	1644	1	0	0	1	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX59_chr1_200639037_200674907	0/1	c0001	1860	256	65	48	108	11	23	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0002	1860	106	21	16	54	1	14	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	1/0	c0003	1860	16	7	5	0	1	2	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0004	1860	5	1	4	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0005	1860	2	0	2	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0006	1860	2	2	0	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0007	1860	1	0	1	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0008	1860	1	0	0	0	1	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	c0009	1860	1	0	0	0	0	1	copy fasta	DDX59	chr1	200639037	200674907
DDX5_chr17_64493254_64511289	1/1	c0001	1845	362	93	57	150	13	47	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0002	1845	3	0	2	0	1	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0003	1845	1	0	0	0	0	1	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0004	1845	1	0	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0005	1845	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0006	1845	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	c0007	1845	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX60L_chr4_168351735_168485492	0/0	c0001	5121	26	0	9	12	1	4	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0002	5121	25	1	10	10	3	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0003	5121	12	0	5	4	0	3	copy fasta	DDX60L	chr4	168351735	168485492