JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX60L_chr4_168351735_168485492	0/0	c0054	5121	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0055	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0056	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0057	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0058	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0059	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0060	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0061	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0062	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0063	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0064	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0065	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0066	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0067	5121	1	0	0	1	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0068	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0069	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0070	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0071	5121	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0072	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0073	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	1/0	c0074	5121	1	0	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0075	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0076	5121	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0077	5121	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0078	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0079	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0080	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0081	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0082	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0083	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0084	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0085	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0086	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0087	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0088	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0089	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0090	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0091	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0092	5121	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0093	5121	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0094	5121	1	0	0	0	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0095	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0096	5121	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0097	5121	1	0	0	0	1	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	c0098	5121	1	0	0	1	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60_chr4_168211294_168323752	1/1	c0001	5139	159	26	40	55	7	29	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0002	5139	21	0	5	16	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0003	5139	11	11	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0004	5139	9	6	2	0	1	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0005	5139	8	0	4	0	1	3	copy fasta	DDX60	chr4	168211294	168323752