JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DDX60_chr4_168211294_168323752	0/0	c0006	5139	6	5	1	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0007	5139	5	5	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0008	5139	5	4	0	0	0	1	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0009	5139	4	4	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0010	5139	3	0	0	0	2	1	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0011	5139	3	3	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0012	5139	3	3	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0013	5139	3	3	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0014	5139	2	1	1	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0015	5139	2	0	1	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0016	5139	2	0	2	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0017	5139	2	2	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0018	5139	2	2	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0019	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0020	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0021	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0022	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0023	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0024	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0025	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0026	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0027	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0028	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0029	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0030	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0031	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0032	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0033	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0034	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0035	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0036	5139	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0037	5139	1	0	0	1	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	c0038	5139	1	0	0	0	1	0	copy fasta	DDX60	chr4	168211294	168323752
DDX6_chr11_118742763_118796164	1/1	c0001	1452	363	88	67	153	12	41	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	c0002	1452	3	0	0	3	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	c0003	1452	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	c0004	1452	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	c0005	1452	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	c0006	1452	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DEAF1_chr11_639233_700222	1/0	c0001	1698	169	28	41	71	5	23	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0002	1698	91	47	11	22	1	10	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0003	1698	53	7	11	30	1	4	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0004	1698	10	0	3	2	0	5	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0005	1698	6	0	0	6	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0006	1698	5	5	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0007	1698	2	0	1	0	1	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0008	1698	2	2	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0009	1698	2	0	0	2	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0010	1698	1	0	0	1	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0011	1698	1	0	0	1	0	0	copy fasta	DEAF1	chr11	639233	700222