JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEAF1_chr11_639233_700222	0/0	c0012	1698	1	1	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0013	1698	1	0	1	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	c0014	1698	1	0	0	1	0	0	copy fasta	DEAF1	chr11	639233	700222
DECR1_chr8_89996477_90058633	1/1	c0001	1008	375	86	64	169	14	40	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	c0002	1008	2	0	0	0	0	2	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	c0003	1008	1	0	0	1	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR2_chr16_396885_417482	0/1	c0001	879	314	62	70	129	14	38	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0002	863	26	18	1	7	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0003	879	10	0	0	9	0	1	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0004	879	3	3	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0005	879	2	0	0	2	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0006	879	2	1	0	0	0	1	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0007	879	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0008	879	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0009	863	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0010	879	1	0	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0011	879	1	0	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0012	879	1	0	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0013	879	1	0	0	1	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0014	879	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0015	879	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	c0016	879	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DEDD2_chr19_42193598_42222677	1/1	c0001	981	206	69	39	56	10	30	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	c0002	981	37	7	7	12	2	9	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	c0003	981	4	0	0	4	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	c0004	981	3	2	1	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	c0005	981	1	0	0	0	0	1	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	c0006	981	1	0	1	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD_chr1_161115974_161137667	1/1	c0001	957	292	52	54	144	14	26	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	c0002	957	42	13	4	23	2	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	c0003	957	2	2	0	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	c0004	957	1	1	0	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	c0005	957	1	0	0	1	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEF6_chr6_35292818_35326771	0/0	c0001	1896	247	37	36	138	7	29	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	1/1	c0002	1896	31	12	11	0	2	4	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0003	1896	11	11	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0004	1896	8	7	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0005	1896	7	5	0	2	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0006	1896	6	5	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0007	1896	4	4	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0008	1896	3	1	2	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0009	1896	2	0	1	0	1	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0010	1896	1	0	0	1	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0011	1896	1	0	0	1	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0012	1896	1	0	0	0	0	1	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0013	1896	1	1	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0014	1896	1	1	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0015	1896	1	0	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	c0016	1896	1	0	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF8_chr16_89943755_89973060	1/1	c0001	1356	328	50	70	148	17	41	copy fasta	DEF8	chr16	89943755	89973060