Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTSL5_chr19_1500022_1518019	0/0	c0005	1416	4	4	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0006	1416	3	3	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0007	1416	2	0	2	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0008	1416	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0009	1416	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0010	1416	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0011	1416	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0012	1416	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0013	1416	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0014	1416	1	0	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0015	1416	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0016	1416	1	0	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0017	1416	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0018	1416	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	c0019	1416	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAP1_chr7_892900_959680	0/1	c0001	1125	12	3	4	0	0	4	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	1/0	c0002	1125	1	0	0	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	c0003	1125	1	1	0	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP2_chr17_30916945_30964322	1/1	c0001	1146	279	87	72	68	16	34	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	c0002	1146	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	c0003	1146	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	c0004	1146	1	1	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADARB1_chr21_45069580_45231560	0/1	c0001	2106	169	28	30	83	5	22	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	1/0	c0002	2106	157	36	31	64	5	20	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0003	2106	4	4	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0004	2106	3	2	1	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0005	2106	3	3	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0006	2106	2	0	0	2	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0007	2106	2	2	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0008	2106	2	2	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0009	2106	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0010	2106	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0011	2106	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0012	2106	1	0	0	1	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0013	2106	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0014	2106	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0015	2106	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	c0016	2106	1	1	0	0	0	0	copy fasta	ADARB1	chr21	45069580	45231560
ADARB2_chr10_1172313_1742525	0/0	c0001	2220	41	19	4	13	1	4	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0002	2220	39	11	4	16	1	7	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0003	2220	8	7	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0004	2220	3	2	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0005	2220	2	1	0	0	0	1	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0006	2220	2	0	0	2	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0007	2220	2	2	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0008	2220	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0009	2220	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0010	2220	1	0	1	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0011	2220	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0012	2220	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525