JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEF8_chr16_89943755_89973060	0/0	c0002	1356	40	30	3	0	1	6	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0003	1356	7	6	1	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0004	1356	7	7	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0005	1356	5	5	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0006	1356	2	0	0	2	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0007	1366	1	0	0	0	0	1	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0008	1356	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEFA1B_chr8_6991766_7004198	0/0	c0000	0	7	3	1	2	1	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0001	285	351	82	58	156	14	41	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0002	285	25	5	9	6	1	4	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0003	285	5	0	0	5	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0004	285	2	2	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0005	285	2	1	1	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0006	285	2	0	1	1	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0007	285	1	1	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0008	285	1	0	0	0	0	1	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0009	285	1	1	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	c0010	285	1	1	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1_chr8_6972649_6985092	0/0	c0001	285	163	44	24	78	5	12	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0002	285	120	31	21	45	8	15	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0003	285	109	8	19	64	5	13	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0004	285	6	0	6	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0005	285	4	4	0	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0006	285	2	1	0	1	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0007	285	1	0	1	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0008	285	1	0	0	1	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0009	285	1	0	1	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	c0010	285	1	0	0	1	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA3_chr8_7010869_7023297	0/0	c0001	285	269	54	47	125	12	31	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0002	285	113	8	26	66	5	8	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0003	285	20	20	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0004	285	13	1	5	2	0	5	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0005	285	4	0	0	4	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0006	285	3	0	2	0	1	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0007	285	2	0	0	1	0	1	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0008	285	2	0	0	1	0	1	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0009	285	1	1	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0010	285	1	0	0	1	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0011	285	1	0	1	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	c0012	285	1	0	1	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA4_chr8_6930820_6943306	0/0	c0000	0	1	0	0	0	1	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	1/1	c0001	294	235	30	56	118	12	17	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0002	294	220	64	25	99	3	29	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0003	294	22	4	0	18	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0004	294	3	1	0	0	0	2	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0005	294	2	0	0	2	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0006	294	1	0	1	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0007	294	1	1	0	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	c0008	294	1	0	0	1	0	0	copy fasta	DEFA4	chr8	6930820	6943306