JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEFA5_chr8_7050304_7061739	1/1	c0001	285	322	72	40	164	13	31	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	c0002	285	135	11	35	68	5	16	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	c0003	285	12	12	0	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	c0004	285	1	0	0	0	0	1	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	c0005	285	1	1	0	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	c0006	285	1	0	1	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA6_chr8_6919697_6931076	1/1	c0001	303	434	65	81	226	16	44	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	c0002	303	10	6	0	0	0	4	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	c0003	303	9	9	0	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	c0004	303	9	9	0	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	c0005	303	5	4	1	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	c0006	303	5	5	0	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFB103A_chr8_7876392_7887663	0/0	c0001	204	168	27	28	90	8	15	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103A_chr8_7876392_7887663	0/0	c0002	204	1	0	0	0	0	1	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103A_chr8_7876392_7887663	0/0	c0003	204	1	1	0	0	0	0	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103B_chr8_7423888_7435348	0/0	c0001	204	171	25	34	90	4	18	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	c0002	204	4	0	0	4	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	c0003	204	1	1	0	0	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB104A_chr8_7831436_7846242	0/0	c0001	219	61	24	10	20	1	6	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	c0002	219	61	2	20	30	2	7	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	c0003	219	19	0	4	13	0	2	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	c0004	219	5	1	2	0	1	1	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	c0005	219	1	1	0	0	0	0	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	c0006	219	1	0	0	1	0	0	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104B_chr8_7465308_7480082	0/0	c0001	219	167	30	24	83	9	21	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB104B_chr8_7465308_7480082	0/0	c0002	219	22	0	8	9	1	4	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB104B_chr8_7465308_7480082	0/0	c0003	219	7	0	2	4	0	1	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB105A_chr8_7816004_7828880	0/0	c0001	237	122	23	23	61	5	10	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	c0002	237	13	1	2	9	1	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	c0003	237	7	0	1	6	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	c0004	237	2	2	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	c0005	237	1	0	1	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	c0006	237	1	0	1	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105B_chr8_7482679_7494593	0/0	c0001	237	128	33	16	63	0	16	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	c0002	237	6	0	0	6	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	c0003	237	1	1	0	0	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	c0004	237	1	0	0	1	0	0	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB106A_chr8_7820139_7834053	0/0	c0001	198	134	39	25	49	9	12	copy fasta	DEFB106A	chr8	7820139	7834053
DEFB106A_chr8_7820139_7834053	0/0	c0002	198	26	3	7	11	3	2	copy fasta	DEFB106A	chr8	7820139	7834053
DEFB106B_chr8_7477504_7491400	0/0	c0001	198	173	31	26	83	6	27	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	c0002	198	3	0	0	2	0	1	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	c0003	198	2	0	0	2	0	0	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	c0004	198	1	1	0	0	0	0	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB106B_chr8_7477504_7491400	0/0	c0005	198	1	0	0	1	0	0	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB107A_chr8_7806720_7820716	0/0	c0001	213	126	28	18	67	7	6	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107A_chr8_7806720_7820716	0/0	c0002	213	44	10	10	19	1	4	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107B_chr8_7490911_7514311	0/0	c0001	213	8	8	0	0	0	0	copy fasta	DEFB107B	chr8	7490911	7514311
DEFB108B_chr11_71828200_71842710	1/1	c0001	222	219	31	36	128	7	15	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0002	222	82	3	26	38	2	13	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0003	222	75	11	11	47	1	5	copy fasta	DEFB108B	chr11	71828200	71842710