JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEFB108B_chr11_71828200_71842710	0/0	c0004	222	32	32	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0005	222	14	14	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0006	222	13	0	3	3	0	7	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0007	222	3	3	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0008	222	1	1	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	c0009	222	1	1	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB109B_chr8_7307722_7325096	0/1	c0001	264	350	43	67	182	16	41	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	c0002	264	12	0	0	12	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	c0003	264	8	8	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	c0004	264	4	0	4	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	c0005	264	2	0	1	0	0	1	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	c0006	264	1	1	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB110_chr6_50013843_50026994	1/1	c0001	204	378	84	66	172	18	36	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	c0002	204	5	5	0	0	0	0	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	c0003	204	2	0	2	0	0	0	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	c0004	204	1	1	0	0	0	0	copy fasta	DEFB110	chr6	50013843	50026994
DEFB112_chr6_50037099_50054929	1/1	c0001	285	323	83	65	124	14	35	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	c0002	285	5	5	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	c0003	285	3	0	0	0	0	3	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	c0004	285	1	0	1	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB113_chr6_49963677_49974625	1/1	c0001	249	386	90	70	170	16	38	copy fasta	DEFB113	chr6	49963677	49974625
DEFB113_chr6_49963677_49974625	0/0	c0002	249	2	2	0	0	0	0	copy fasta	DEFB113	chr6	49963677	49974625
DEFB114_chr6_49955249_49969164	1/1	c0001	210	382	91	63	179	15	32	copy fasta	DEFB114	chr6	49955249	49969164
DEFB114_chr6_49955249_49969164	0/0	c0002	210	16	1	7	3	3	2	copy fasta	DEFB114	chr6	49955249	49969164
DEFB114_chr6_49955249_49969164	0/0	c0003	210	2	2	0	0	0	0	copy fasta	DEFB114	chr6	49955249	49969164
DEFB115_chr20_31252664_31264632	1/1	c0001	267	436	96	84	194	18	42	copy fasta	DEFB115	chr20	31252664	31264632
DEFB116_chr20_31298212_31313585	1/1	c0001	309	378	69	73	174	18	42	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	c0002	309	30	27	3	0	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	c0003	309	4	0	4	0	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB116_chr20_31298212_31313585	0/0	c0004	309	4	0	0	4	0	0	copy fasta	DEFB116	chr20	31298212	31313585
DEFB118_chr20_31363601_31378923	1/1	c0001	372	354	73	76	147	18	38	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	c0002	372	15	14	1	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	c0003	372	6	6	0	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	c0004	372	1	0	0	1	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	c0005	372	1	0	1	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	c0006	372	1	1	0	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB119_chr20_31372164_31395590	1/1	c0001	255	367	90	79	140	16	40	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	0/0	c0002	255	2	2	0	0	0	0	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	0/0	c0003	255	1	0	1	0	0	0	copy fasta	DEFB119	chr20	31372164	31395590
DEFB121_chr20_31399845_31411215	1/1	c0001	231	371	91	80	142	16	40	copy fasta	DEFB121	chr20	31399845	31411215
DEFB121_chr20_31399845_31411215	0/0	c0002	231	1	1	0	0	0	0	copy fasta	DEFB121	chr20	31399845	31411215
DEFB123_chr20_31435632_31455257	1/1	c0001	204	372	90	78	154	14	34	copy fasta	DEFB123	chr20	31435632	31455257
DEFB124_chr20_31460471_31480127	1/1	c0001	216	356	86	76	132	16	44	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/0	c0002	216	3	3	0	0	0	0	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/0	c0003	216	3	3	0	0	0	0	copy fasta	DEFB124	chr20	31460471	31480127
DEFB125_chr20_82672_102094	0/1	c0001	471	350	67	57	180	13	32	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	1/0	c0002	471	119	25	22	57	1	13	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	c0003	471	1	0	0	1	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	c0004	471	1	0	0	0	0	1	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	c0005	471	1	0	1	0	0	0	copy fasta	DEFB125	chr20	82672	102094