JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEFB126_chr20_137590_150751	1/0	c0001	336	215	41	37	113	9	14	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0002	334	151	19	28	76	6	22	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/1	c0003	330	59	17	9	19	3	10	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0004	334	20	0	0	20	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0005	336	8	6	0	0	0	2	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0006	330	2	2	0	0	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0007	336	2	2	0	0	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0008	336	2	2	0	0	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB126_chr20_137590_150751	0/0	c0009	330	1	1	0	0	0	0	copy fasta	DEFB126	chr20	137590	150751
DEFB127_chr20_152454_164163	1/1	c0001	300	269	85	49	100	9	24	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	c0002	300	160	4	27	104	5	20	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	c0003	300	19	0	0	19	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	c0004	300	1	1	0	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	c0005	300	1	0	0	1	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB128_chr20_182853_194711	0/1	c0001	282	256	63	40	123	8	21	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	1/0	c0002	282	201	18	39	110	6	27	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	c0003	282	8	8	0	0	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	c0004	282	2	2	0	0	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	c0005	282	1	0	0	1	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	c0006	282	1	1	0	0	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB128_chr20_182853_194711	0/0	c0007	282	1	0	1	0	0	0	copy fasta	DEFB128	chr20	182853	194711
DEFB129_chr20_222258_234886	1/0	c0001	552	185	40	31	92	11	10	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/1	c0002	552	123	5	30	62	6	19	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0003	552	112	46	12	46	1	7	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0004	552	17	0	0	17	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0005	552	9	8	1	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0006	552	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0007	552	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0008	552	1	0	0	1	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	c0009	552	1	1	0	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB130A_chr8_12305962_12323316	0/0	c0001	240	290	31	51	159	12	37	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130A_chr8_12305962_12323316	0/0	c0002	240	45	27	5	8	0	5	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130A_chr8_12305962_12323316	0/0	c0003	240	2	2	0	0	0	0	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130A_chr8_12305962_12323316	0/0	c0004	240	1	0	0	1	0	0	copy fasta	DEFB130A	chr8	12305962	12323316
DEFB130B_chr8_12059389_12076747	0/0	c0001	240	2	2	0	0	0	0	copy fasta	DEFB130B	chr8	12059389	12076747
DEFB131A_chr4_9439414_9455666	1/1	c0001	213	410	70	78	196	16	48	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	c0002	213	10	8	2	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	c0003	213	2	0	2	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	c0004	213	1	1	0	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	c0005	213	1	1	0	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131B_chr11_71873453_71889561	0/0	c0001	213	414	97	70	192	12	43	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB131B_chr11_71873453_71889561	0/0	c0002	213	1	0	0	0	0	1	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB131B_chr11_71873453_71889561	0/0	c0003	213	1	1	0	0	0	0	copy fasta	DEFB131B	chr11	71873453	71889561
DEFB132_chr20_252724_266096	0/0	c0001	282	238	52	38	115	11	22	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	1/1	c0002	288	152	30	29	69	7	15	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0003	282	10	0	0	8	0	2	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0004	282	10	2	0	7	0	1	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0005	288	9	0	0	9	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0006	288	5	5	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0007	282	3	3	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096