JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEFB132_chr20_252724_266096	0/0	c0008	288	1	0	1	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0009	282	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	c0010	282	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB134_chr8_11988174_12005752	1/1	c0001	201	432	87	77	202	18	46	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	c0002	201	14	13	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	c0003	201	1	0	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	c0004	201	1	0	1	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB135_chr8_11977256_11989590	1/1	c0001	234	420	92	69	194	18	45	copy fasta	DEFB135	chr8	11977256	11989590
DEFB135_chr8_11977256_11989590	0/0	c0002	234	9	7	1	0	0	1	copy fasta	DEFB135	chr8	11977256	11989590
DEFB135_chr8_11977256_11989590	0/0	c0003	234	1	1	0	0	0	0	copy fasta	DEFB135	chr8	11977256	11989590
DEFB136_chr8_11968937_11979599	0/0	c0001	237	353	71	48	188	8	38	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	1/1	c0002	237	60	12	26	0	8	12	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	0/0	c0003	237	11	11	0	0	0	0	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	0/0	c0004	237	1	1	0	0	0	0	copy fasta	DEFB136	chr8	11968937	11979599
DEFB136_chr8_11968937_11979599	0/0	c0005	237	1	1	0	0	0	0	copy fasta	DEFB136	chr8	11968937	11979599
DEFB1_chr8_6865592_6882936	1/1	c0001	207	440	78	76	222	18	44	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0002	207	20	15	0	5	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0003	207	6	0	0	6	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0004	207	5	5	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0005	207	2	0	0	2	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0006	207	2	0	2	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0007	207	1	0	0	1	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0008	207	1	1	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	c0009	207	1	1	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB4A_chr8_7889677_7901716	0/0	c0001	195	76	15	22	20	4	15	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4A_chr8_7889677_7901716	0/0	c0002	195	15	3	6	6	0	0	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4A_chr8_7889677_7901716	0/0	c0003	195	2	2	0	0	0	0	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4A_chr8_7889677_7901716	0/0	c0004	195	1	0	0	0	0	1	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4B_chr8_7409855_7421863	0/0	c0001	195	66	11	17	30	3	5	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	c0002	195	61	4	18	34	2	3	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	c0003	195	14	3	9	2	0	0	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	c0004	195	1	0	0	0	1	0	copy fasta	DEFB4B	chr8	7409855	7421863
DEGS1_chr1_224178240_224198441	1/1	c0001	972	408	90	74	183	16	43	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	c0002	972	14	6	4	3	0	1	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	c0003	972	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	c0004	972	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	c0005	972	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	c0006	972	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS2_chr14_100138957_100164645	0/0	c0001	972	295	60	57	145	9	24	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0002	972	58	5	14	27	3	9	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0003	972	28	19	3	1	0	5	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0004	972	23	2	3	15	1	2	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	1/1	c0005	972	14	1	5	0	1	5	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0006	972	4	0	0	4	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0007	972	4	4	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0008	972	2	2	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0009	972	2	0	0	0	0	2	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0010	972	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0011	972	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0012	972	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645