JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEGS2_chr14_100138957_100164645	0/0	c0013	972	1	0	0	0	1	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0014	972	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0015	972	1	0	0	0	1	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0016	972	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0017	972	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0018	972	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	c0019	972	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEK_chr6_18218860_18269530	1/0	c0001	1128	275	80	57	99	13	25	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/1	c0002	1128	67	3	9	45	1	8	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	c0003	1128	19	2	10	2	0	5	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	c0004	1128	2	2	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	c0005	1128	1	1	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DELE1_chr5_141918871_141947047	1/1	c0001	1548	253	59	46	104	11	31	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0002	1548	59	3	20	26	5	5	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0003	1548	17	0	2	8	2	5	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0004	1548	15	14	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0005	1548	4	4	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0006	1548	3	3	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0007	1548	2	2	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0008	1548	2	2	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0009	1548	2	1	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0010	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0011	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0012	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0013	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0014	1548	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0015	1548	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0016	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0017	1548	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0018	1548	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0019	1548	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	c0020	1548	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DENND10_chr10_119099113_119142984	0/1	c0001	1074	330	69	65	151	12	32	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0002	1074	20	14	3	3	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0003	1074	10	0	0	10	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	1/0	c0004	1074	8	5	2	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0005	1074	2	2	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0006	1074	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0007	1074	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0008	1074	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	c0009	1074	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND11_chr7_141651728_141707166	0/0	c0001	1368	234	65	48	82	14	25	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/1	c0002	1368	103	8	12	67	2	13	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0003	1368	2	0	2	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0004	1368	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0005	1368	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0007	1368	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0008	1368	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	c0009	1368	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166