JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND1A_chr9_123374658_123935126	0/0	c0001	3213	58	38	8	9	0	3	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/1	c0002	3213	47	9	12	10	2	13	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0003	3213	13	6	2	0	1	4	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0004	3213	8	2	0	4	0	2	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0005	3213	7	6	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0006	3213	6	3	0	3	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0007	3213	3	3	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0008	3213	2	1	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0009	3213	2	2	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0010	3213	2	0	0	2	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0011	3213	2	0	2	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0012	3213	2	2	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0013	3213	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	1/0	c0014	3213	1	0	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0015	3213	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0016	3213	1	0	0	0	1	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0017	3213	1	0	0	1	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0018	3213	1	0	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0019	3213	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0020	3213	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0021	3213	1	0	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	c0022	3213	1	0	0	1	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1B_chr1_197499748_197780480	1/1	c0001	2328	189	60	29	75	6	17	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0002	2328	68	6	13	35	2	12	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0003	2328	6	6	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0004	2328	4	0	0	4	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0005	2328	2	0	1	0	0	1	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0006	2328	2	0	1	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0007	2328	2	2	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0008	2328	2	0	0	2	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0009	2328	1	0	0	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0010	2328	1	0	0	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0011	2328	1	1	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0012	2328	1	1	0	0	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	c0013	2328	1	0	0	1	0	0	copy fasta	DENND1B	chr1	197499748	197780480
DENND1C_chr19_6462207_6486787	1/0	c0001	2406	167	14	22	108	7	15	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0002	2406	135	20	29	64	5	17	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/1	c0003	2406	51	20	19	0	4	7	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0004	2406	14	14	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0005	2406	6	6	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0006	2406	6	0	1	0	0	5	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0007	2406	5	0	0	5	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0008	2406	4	0	3	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0009	2406	3	3	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0010	2406	3	3	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0011	2406	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0012	2406	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0013	2406	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0014	2406	2	0	1	0	1	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0015	2406	2	2	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787