JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND1C_chr19_6462207_6486787	0/0	c0016	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0017	2406	1	0	0	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0018	2406	1	0	0	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0019	2406	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0020	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0021	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0022	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0023	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0024	2406	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0025	2406	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0026	2406	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0027	2406	1	0	0	1	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0028	2406	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0029	2406	1	0	0	0	1	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0030	2406	1	0	0	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	c0031	2406	1	0	1	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND2A_chr7_140513420_140645813	0/0	c0001	3030	85	10	20	35	4	16	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/1	c0002	3030	64	16	22	11	4	10	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0003	3030	24	9	8	1	0	6	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0004	3030	12	12	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0005	3030	10	9	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0006	3030	8	5	1	0	1	1	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0007	3030	6	0	6	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0008	3030	5	1	3	0	1	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0009	3030	4	3	0	0	0	1	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0010	3030	2	0	0	0	0	2	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0011	3030	2	1	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0012	3030	2	0	0	2	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0013	3030	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0014	3030	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0015	3030	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0016	3030	1	0	0	0	0	1	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0017	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0018	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0019	3030	1	0	0	1	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0020	3030	1	0	0	1	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0021	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0022	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0023	3030	1	0	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0024	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0025	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0026	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0027	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0028	3030	1	0	0	1	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0029	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0030	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0031	3030	1	0	1	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0032	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0033	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0034	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813