JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND2A_chr7_140513420_140645813	0/0	c0035	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0036	3030	1	0	0	0	0	1	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0037	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	c0038	3030	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	1/0	c0039	3030	1	0	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2B_chr11_8688352_8815674	1/0	c0001	3414	134	67	13	41	2	10	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0002	3414	90	12	19	42	7	10	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/1	c0003	3414	89	3	17	53	4	11	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0004	3414	7	1	3	0	0	3	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0005	3414	6	0	0	4	1	1	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0006	3414	6	0	0	6	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0007	3414	6	5	1	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0008	3414	3	0	1	2	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0009	3414	2	0	0	2	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0010	3414	2	0	2	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0011	3414	1	0	0	0	0	1	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0012	3414	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0013	3414	1	0	1	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0014	3414	1	0	1	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0015	3414	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0016	3414	1	1	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	c0017	3414	1	1	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2C_chr1_114577850_114675049	1/0	c0001	2787	213	61	35	103	1	12	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0002	2787	35	2	12	10	6	5	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0003	2787	22	1	11	0	1	9	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/1	c0004	2787	15	4	4	1	1	4	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0005	2787	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0006	2787	2	0	0	1	0	1	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0007	2787	2	0	2	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0008	2787	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0009	2787	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0010	2787	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0011	2787	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0012	2787	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0013	2787	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0014	2787	1	0	0	0	1	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0015	2787	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	c0016	2787	1	0	0	0	0	1	copy fasta	DENND2C	chr1	114577850	114675049
DENND2D_chr1_111180969_111205646	1/1	c0001	1416	411	74	66	219	13	37	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0002	1416	46	17	14	0	3	12	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0003	1416	4	3	1	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0004	1416	2	2	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0005	1416	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0006	1416	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0007	1416	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0008	1416	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0009	1416	1	0	1	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0010	1416	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0011	1416	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	c0012	1416	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646