JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND2D_chr1_111180969_111205646	0/0	c0013	1416	1	0	0	0	0	1	copy fasta	DENND2D	chr1	111180969	111205646
DENND3_chr8_141123589_141200804	0/0	c0001	3837	38	1	2	30	0	5	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0002	3837	28	0	14	14	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/1	c0003	3837	26	0	9	4	3	9	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0004	3837	26	0	7	13	0	6	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0005	3837	24	1	0	22	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0006	3837	22	0	8	8	1	5	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0007	3837	16	0	5	6	0	5	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0008	3837	14	8	2	0	3	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0009	3837	14	2	1	10	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0010	3837	10	0	4	5	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0011	3837	9	0	5	1	2	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0012	3837	8	1	2	3	1	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0013	3837	8	0	0	8	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0014	3837	6	5	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0015	3837	6	3	1	0	0	2	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0016	3837	6	0	6	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0017	3837	6	1	3	0	2	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0018	3837	5	0	0	5	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	1/0	c0019	3837	5	1	1	0	1	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0020	3837	5	5	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0021	3837	4	4	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0022	3837	4	3	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0023	3837	4	4	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0024	3837	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0025	3837	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0026	3837	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0027	3837	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0028	3837	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0029	3837	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0030	3837	3	1	0	1	1	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0031	3837	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0032	3837	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0033	3837	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0034	3837	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0035	3837	3	1	1	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0036	3837	3	2	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0037	3837	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0038	3837	2	1	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0039	3837	2	0	1	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0040	3837	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0041	3837	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0042	3837	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0043	3837	2	0	0	0	0	2	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0044	3837	2	2	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0045	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0046	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0047	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0048	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0049	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804