Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADARB2_chr10_1172313_1742525	0/0	c0013	2220	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0014	2220	1	1	0	0	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0015	2220	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADARB2_chr10_1172313_1742525	0/0	c0016	2220	1	0	0	1	0	0	copy fasta	ADARB2	chr10	1172313	1742525
ADAR_chr1_154577057_154613186	0/1	c0001	3681	246	21	58	129	10	27	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0002	3681	100	15	18	50	5	12	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0003	3681	32	32	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0004	3681	7	4	3	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0005	3681	5	5	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	1/0	c0006	3681	4	3	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0007	3681	3	3	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0008	3681	2	0	0	0	0	2	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0009	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0010	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0011	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0012	3681	1	0	0	0	0	1	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0013	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0014	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0015	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0016	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0017	3681	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0018	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0019	3681	1	0	1	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0020	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0021	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0022	3681	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0023	3681	1	1	0	0	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0024	3681	1	0	0	0	1	0	copy fasta	ADAR	chr1	154577057	154613186
ADAR_chr1_154577057_154613186	0/0	c0025	3681	1	0	0	1	0	0	copy fasta	ADAR	chr1	154577057	154613186
ADAT1_chr16_75591868_75628281	1/0	c0001	1509	115	21	37	26	10	20	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0002	1509	106	1	22	69	1	13	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/1	c0003	1509	48	14	8	22	1	2	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0004	1509	22	16	2	3	0	1	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0005	1509	17	13	2	1	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0006	1509	14	11	3	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0007	1509	4	0	0	4	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0008	1509	4	4	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0009	1509	4	0	0	4	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0010	1509	3	0	0	3	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0011	1509	3	0	0	3	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0012	1509	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0013	1509	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0014	1509	2	2	0	0	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0015	1509	1	0	0	1	0	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT1_chr16_75591868_75628281	0/0	c0016	1509	1	0	0	0	1	0	copy fasta	ADAT1	chr16	75591868	75628281
ADAT2_chr6_143417832_143455695	1/1	c0001	576	304	64	68	124	12	34	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	c0002	576	14	14	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	c0003	576	3	3	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	c0004	576	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT3_chr19_1900399_1918447	1/0	c0001	1104	246	40	46	110	15	34	copy fasta	ADAT3	chr19	1900399	1918447