JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND3_chr8_141123589_141200804	0/0	c0050	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0051	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0052	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0053	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0054	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0055	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0056	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0057	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0058	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0059	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0060	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0061	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0062	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0063	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0064	3837	1	0	0	0	1	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0065	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0066	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0067	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0068	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0069	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0070	3837	1	0	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0071	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0072	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0073	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0074	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0075	3837	1	0	0	0	1	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0076	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0077	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0078	3837	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0079	3837	1	0	0	0	0	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0080	3837	1	0	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0081	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0082	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0083	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0084	3837	1	0	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	c0085	3837	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND4A_chr15_65654123_65797293	1/0	c0001	5724	180	47	35	69	9	19	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/1	c0002	5724	74	5	12	44	3	9	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0003	5724	18	16	2	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0004	5724	5	5	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0005	5724	3	0	0	0	0	3	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0006	5724	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0007	5724	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0008	5724	2	0	1	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0009	5724	2	0	0	0	0	2	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0010	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0011	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0012	5724	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0013	5724	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0014	5724	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293