JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND4A_chr15_65654123_65797293	0/0	c0015	5724	1	0	1	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0016	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0017	5724	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0018	5724	1	0	1	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0019	5724	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0020	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0021	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0022	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0023	5724	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0024	5724	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	c0025	5724	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4B_chr1_153924501_153951718	1/1	c0001	4491	182	52	31	73	6	18	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0002	4482	111	10	33	54	3	11	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0003	4494	50	1	11	30	1	7	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0004	4491	9	9	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0005	4494	8	7	1	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0006	4482	5	0	1	4	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0007	4491	3	0	0	1	0	2	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0008	4491	3	0	0	3	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0009	4482	2	1	1	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0010	4491	2	2	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0011	4482	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0012	4491	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0013	4494	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0014	4491	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0015	4491	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0016	4491	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0017	4482	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0018	4491	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0019	4491	1	1	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0020	4482	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	c0021	4504	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4C_chr9_19225693_19379281	1/0	c0001	5877	164	27	25	82	10	19	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/1	c0002	5877	55	27	16	1	3	7	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0003	5877	14	13	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0004	5877	13	0	11	0	1	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0005	5877	6	6	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0006	5877	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0007	5877	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0008	5877	3	0	0	0	2	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0009	5877	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0010	5877	2	0	0	2	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0011	5877	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0012	5877	2	0	2	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0013	5877	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0014	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0015	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0016	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0017	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0018	5877	1	0	0	0	0	1	copy fasta	DENND4C	chr9	19225693	19379281