JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND4C_chr9_19225693_19379281	0/0	c0019	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0020	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0021	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0022	5877	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0023	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0024	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0025	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0026	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0027	5877	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0028	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0029	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0030	5877	1	0	0	0	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0031	5877	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0032	5877	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0033	5877	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	c0034	4695	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND5A_chr11_9133825_9270350	1/0	c0001	3864	156	47	40	36	10	22	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/1	c0002	3864	95	19	16	39	4	16	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0003	3864	8	7	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0004	3864	7	6	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0005	3864	4	0	0	4	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0006	3864	3	3	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0007	3864	2	2	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0008	3864	2	1	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0009	3864	2	2	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0010	3864	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0011	3864	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0012	3864	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0013	3864	1	0	0	1	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	c0014	3864	1	0	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5B_chr12_31377226_31596136	1/0	c0001	3825	119	42	22	29	6	19	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/1	c0002	3825	90	12	12	50	5	10	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0003	3825	78	26	10	36	3	3	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0004	3825	4	4	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0005	3825	4	4	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0006	3825	2	0	0	1	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0007	3825	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0008	3825	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0009	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0010	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0011	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0012	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0013	3825	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0014	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0015	3825	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0016	3825	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	c0017	3825	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND6A_chr3_57620454_57698077	1/1	c0001	1827	305	71	61	122	12	37	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0002	1827	18	16	2	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0003	1827	4	3	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077