JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DENND6A_chr3_57620454_57698077	0/0	c0004	1827	1	0	0	0	0	1	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0005	1827	1	1	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0006	1827	1	0	0	1	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0007	1827	1	0	0	1	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	c0008	1827	1	1	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6B_chr22_50304030_50332012	1/1	c0001	1758	128	25	29	57	4	11	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0002	1758	69	11	19	24	6	9	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0003	1758	24	3	2	12	1	6	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0004	1758	24	24	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0005	1758	14	0	0	13	1	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0006	1758	11	0	0	11	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0007	1758	9	7	1	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0008	1758	8	0	3	0	0	5	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0009	1758	7	1	5	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0010	1758	5	2	1	1	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0011	1758	4	3	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0012	1758	4	4	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0013	1759	3	0	1	2	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0014	1758	3	3	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0015	1758	2	0	0	2	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0016	1758	2	2	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0017	1758	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0018	1758	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0019	1759	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0020	1758	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0021	1759	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0022	1758	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0023	1758	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0024	1758	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	c0025	1758	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENR_chr12_122747824_122776064	1/1	c0001	597	358	93	66	139	16	42	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	c0002	597	4	0	0	4	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	c0003	597	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	c0004	597	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DEPDC1B_chr5_60591912_60705166	1/1	c0001	1590	283	70	54	114	14	29	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0002	1590	2	2	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0003	1590	2	2	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0004	1590	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0005	1590	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0006	1590	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0007	1590	1	0	0	1	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	c0008	1590	1	0	0	0	0	1	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1_chr1_68469152_68502082	1/1	c0001	2436	333	86	63	131	15	36	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0002	2436	19	7	1	8	1	2	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0003	2436	4	0	0	4	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0004	2436	2	0	0	2	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0005	2436	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0006	2436	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0007	2436	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0008	2436	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082