JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEPDC1_chr1_68469152_68502082	0/0	c0009	2436	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	c0010	2436	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC4_chr12_100235062_100272079	1/1	c0001	1491	311	65	68	127	11	38	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0002	1491	28	21	6	0	1	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0003	1491	3	3	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0004	1491	2	2	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0005	1491	2	0	0	0	2	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0006	1491	2	2	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0007	1551	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0008	1491	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0009	1491	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0010	1491	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0011	1491	1	0	0	0	0	1	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0012	1491	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0013	1491	1	0	0	0	0	1	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0014	1491	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0015	1491	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	c0016	1491	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC5_chr22_31749019_31913033	1/1	c0001	4812	133	39	29	42	5	16	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0002	4812	23	8	10	2	0	3	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0003	4812	10	0	5	5	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0004	4812	8	7	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0005	4812	5	5	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0006	4812	3	1	0	0	2	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0007	4812	3	3	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0008	4812	3	0	2	0	0	1	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0009	4812	2	1	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0010	4812	2	2	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0011	4812	2	2	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0012	4812	2	0	0	0	0	2	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0013	4812	2	1	0	0	1	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0014	4812	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0015	4812	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0016	4812	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0017	4812	1	0	0	1	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0018	4812	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	c0019	4812	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC7_chr11_33010878_33038582	1/1	c0001	1536	216	57	28	99	7	23	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0002	1536	155	30	28	86	7	4	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0003	1536	30	0	11	10	2	7	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0004	1536	5	0	3	0	0	2	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0005	1536	4	3	1	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0006	1536	3	0	0	3	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0007	1536	2	0	2	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0008	1536	2	0	0	0	0	2	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0009	73	1	0	1	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0010	1536	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0011	1536	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	c0013	1536	1	0	0	1	0	0	copy fasta	DEPDC7	chr11	33010878	33038582