JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DEPP1_chr10_44971128_44983809	1/1	c0001	639	311	88	57	117	11	36	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0002	639	74	1	4	59	3	7	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0003	640	21	4	8	9	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0004	640	7	0	0	6	0	1	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0005	639	4	3	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0006	639	3	0	0	3	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0007	639	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0008	639	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0009	639	1	0	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	c0010	639	1	0	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPTOR_chr8_119868722_120055918	1/0	c0001	1230	54	18	10	5	6	14	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/1	c0002	1230	40	19	4	2	2	12	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0003	1230	38	15	4	5	1	13	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0004	1230	37	6	12	10	3	6	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0005	1230	10	8	1	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0006	1230	5	4	1	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0007	1230	4	2	2	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0008	1230	3	2	0	0	0	1	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0009	1230	2	0	2	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0010	1230	2	2	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0011	1230	1	0	0	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0012	1230	1	1	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	c0013	1230	1	1	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DERA_chr12_15906332_16042381	1/1	c0001	957	253	78	52	92	4	25	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	c0002	957	2	2	0	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	c0003	957	2	2	0	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	c0004	957	1	0	0	0	0	1	copy fasta	DERA	chr12	15906332	16042381
DERL1_chr8_123008170_123047302	1/1	c0001	756	397	84	70	197	9	35	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	c0002	756	13	1	5	4	1	2	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	c0003	756	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	c0004	756	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	c0005	756	1	0	0	0	0	1	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	c0006	756	1	0	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL2_chr17_5466254_5491178	1/1	c0001	720	423	93	75	198	14	41	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	c0002	720	2	0	0	2	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	c0003	720	1	0	1	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	c0004	720	1	0	0	0	0	1	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	c0005	720	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL3_chr22_23829503_23844006	0/1	c0001	708	269	17	56	160	8	27	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0002	708	94	51	9	14	4	16	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0003	708	50	26	13	6	4	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0004	708	7	0	0	7	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0005	708	6	0	0	6	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0006	708	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0007	708	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0008	708	1	0	0	1	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0009	708	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	c0010	708	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERPC_chr16_69113010_69137588	1/1	c0001	1575	299	87	59	94	14	43	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0002	1575	27	0	7	19	0	1	copy fasta	DERPC	chr16	69113010	69137588