JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DERPC_chr16_69113010_69137588	0/0	c0003	1575	5	1	3	0	1	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0004	1575	4	3	1	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0005	1575	3	0	2	0	1	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0006	1575	2	0	1	0	0	1	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0007	1575	1	0	1	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0008	1575	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0009	1575	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	c0012	1575	1	0	0	0	0	1	copy fasta	DERPC	chr16	69113010	69137588
DESI1_chr22_41593028_41626043	1/1	c0001	507	308	90	58	112	12	34	copy fasta	DESI1	chr22	41593028	41626043
DESI2_chr1_244648126_244714033	1/1	c0001	585	360	88	68	158	14	30	copy fasta	DESI2	chr1	244648126	244714033
DES_chr2_219413377_219431734	0/1	c0001	1413	193	14	31	118	8	21	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0002	1413	120	32	36	41	4	7	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	1/0	c0003	1413	19	14	2	0	0	2	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0004	1413	10	10	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0005	1413	8	8	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0006	1413	5	5	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0007	1413	5	5	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0008	1413	4	0	3	0	0	1	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0009	1413	3	3	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0010	1413	2	0	2	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0011	1413	1	0	1	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0012	1413	1	0	0	0	0	1	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0013	1413	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0014	1413	1	1	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0015	1413	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0016	1413	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	c0017	1413	1	0	1	0	0	0	copy fasta	DES	chr2	219413377	219431734
DET1_chr15_88507480_88551681	1/1	c0001	1653	386	89	61	178	14	42	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0002	1653	5	0	1	0	2	2	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0003	1653	4	3	1	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0004	1653	3	3	0	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0005	1653	1	0	0	1	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0006	1653	1	0	1	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0007	1653	1	0	0	1	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	c0008	1653	1	1	0	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DEUP1_chr11_93325742_93443470	0/1	c0001	1815	177	42	34	76	5	19	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0002	1815	119	17	19	65	5	13	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	1/0	c0003	1815	57	12	8	27	0	9	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0004	1815	2	2	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0005	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0006	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0007	1815	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0008	1815	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0009	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0010	1815	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0011	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0012	1815	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	c0013	1815	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470