JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DGKE_chr17_56829151_56874567	0/1	c0001	1704	185	38	54	64	7	21	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	1/0	c0002	1704	74	36	3	21	2	11	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0003	1704	41	12	10	8	3	8	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0004	1704	14	1	0	12	0	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0005	1704	3	3	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0006	1704	2	0	0	2	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0007	1704	1	0	0	0	0	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0008	1704	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0009	1704	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0010	1704	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	c0011	1704	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKG_chr3_186142201_186367234	0/0	c0001	2376	71	27	15	16	4	9	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0002	2376	67	19	16	19	1	12	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0003	2376	23	16	5	0	0	2	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0004	2376	19	1	3	9	0	6	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/1	c0005	2376	16	1	7	1	2	4	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0006	2376	8	0	1	6	1	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0007	2376	6	2	2	0	0	2	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	1/0	c0008	2376	5	2	1	0	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0009	2376	3	2	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0010	2376	3	3	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0011	2376	2	2	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0012	2376	2	2	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0013	2376	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0014	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0015	2376	1	0	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0016	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0017	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0018	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0019	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0020	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	c0021	2376	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKH_chr13_42043648_42247896	0/0	c0001	3663	94	17	21	41	5	10	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0002	3663	53	15	9	26	0	3	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0003	3663	41	6	14	15	1	5	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	1/0	c0004	3663	40	16	3	8	0	12	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0005	3663	28	1	3	18	3	3	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/1	c0006	3663	12	3	3	2	1	2	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0007	3663	7	6	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0008	3663	6	4	0	2	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0009	3663	5	0	0	5	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0010	3663	4	0	0	4	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0011	3663	4	3	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0012	3663	2	2	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0013	3663	2	2	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0014	3663	2	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0015	3663	1	0	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0016	3663	1	0	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0017	3663	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0018	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896