JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DGKH_chr13_42043648_42247896	0/0	c0019	3663	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0020	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0021	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0022	3663	1	1	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0023	3663	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0024	3663	1	0	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0025	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0026	3663	1	0	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0027	3663	1	1	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0028	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0029	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	c0030	3663	1	0	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKI_chr7_137376037_137851974	1/1	c0001	3174	12	9	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0002	3174	10	10	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0003	3174	10	6	3	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0004	3174	7	5	1	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0005	3174	7	3	1	1	0	2	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0006	3174	7	7	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0007	3174	6	5	0	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0008	3174	6	5	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0009	3174	5	5	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0010	3174	5	5	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0011	3174	3	3	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0012	3174	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0013	3174	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0014	3174	2	1	0	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0015	3174	2	0	0	2	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0016	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0017	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0018	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0019	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0020	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0021	3174	1	0	0	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0022	3174	1	0	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	c0023	3174	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKK_chrX_50360409_50475825	1/1	c0001	3816	108	6	22	56	5	17	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0002	3816	49	18	8	21	0	2	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0003	3816	30	24	6	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0004	3816	25	0	11	10	1	3	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0005	3816	6	0	0	6	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0006	3810	6	4	2	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0007	3810	5	5	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0008	3816	3	3	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0009	3816	2	2	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0010	3810	2	1	0	0	1	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0011	3816	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0012	3815	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0013	3816	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0014	3816	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	c0015	3816	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825