JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHCR24_chr1_54844627_54892195	0/0	c0008	1551	1	0	0	1	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	c0009	1551	1	0	1	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR7_chr11_71429411_71453393	0/1	c0001	1428	111	10	33	51	9	7	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0002	1428	96	16	11	54	4	11	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	1/0	c0003	1428	86	14	17	31	1	22	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0004	1428	38	14	2	16	1	5	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0005	1428	19	11	2	6	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0006	1428	17	0	2	15	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0007	1428	13	13	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0008	1428	5	5	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0009	1428	2	0	0	2	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0010	1428	2	2	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0011	1428	2	2	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0012	1428	2	0	0	2	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0013	1428	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0014	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0015	1428	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0016	1428	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0017	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0018	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0019	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0020	1428	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0021	1428	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0022	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0023	1428	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0024	1428	1	0	0	0	1	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0025	1428	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0026	1428	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0027	1428	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0028	1428	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	c0029	1450	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHDDS_chr1_26427321_26476306	0/0	c0001	1002	200	58	53	49	15	25	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	c0002	1002	114	32	21	49	1	11	copy fasta	DHDDS	chr1	26427321	26476306
DHDH_chr19_48928699_48949969	1/1	c0001	1005	175	22	36	77	11	27	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0002	1006	94	2	12	71	1	8	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0003	1005	33	21	2	8	0	2	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0004	1005	25	6	2	14	0	3	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0005	1004	18	0	11	5	0	2	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0006	1005	14	11	2	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0007	1006	12	0	0	12	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0008	1005	10	8	2	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0009	1005	8	1	4	1	1	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0010	1005	6	6	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0011	1005	3	3	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0012	1005	3	3	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0013	1005	3	3	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0014	1005	3	0	0	2	1	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0015	1005	2	1	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0016	1005	2	1	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0017	1005	2	2	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969