JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHDH_chr19_48928699_48949969	0/0	c0018	1005	2	2	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0019	1005	2	0	0	1	0	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0020	1005	2	0	0	2	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0021	1004	2	0	1	0	1	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0022	1005	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0023	1006	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0024	1005	1	0	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0025	1005	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0026	1005	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0027	1006	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0028	1006	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0029	1005	1	1	0	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0030	842	1	0	0	0	0	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0031	1005	1	0	1	0	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0032	1005	1	0	0	0	1	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0033	1005	1	0	0	0	0	1	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0034	1005	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0035	1006	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHDH_chr19_48928699_48949969	0/0	c0036	1006	1	0	0	1	0	0	copy fasta	DHDH	chr19	48928699	48949969
DHFR2_chr3_94052922_94067916	1/0	c0001	564	302	91	49	121	11	29	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/1	c0002	564	60	0	19	29	3	8	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	c0003	564	31	1	4	19	2	5	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	c0004	564	1	0	0	1	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR_chr5_80621226_80659983	0/0	c0001	564	375	90	72	158	16	39	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	c0002	564	1	0	0	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHH_chr12_49081656_49099801	1/1	c0001	1191	421	95	64	201	18	41	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	c0002	1191	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	c0003	1191	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	c0004	1191	1	0	0	0	0	1	copy fasta	DHH	chr12	49081656	49099801
DHODH_chr16_72003744_72032659	0/0	c0001	1188	231	44	57	101	7	22	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	1/1	c0002	1188	157	41	20	62	7	25	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0003	1188	16	0	2	11	2	1	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0004	1188	2	2	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0005	1188	2	2	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0006	1188	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0007	1230	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0010	1188	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	c0011	1188	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHPS_chr19_12670717_12686880	1/1	c0001	1110	373	71	67	167	16	50	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0002	1110	19	18	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0003	1110	4	4	0	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0004	1110	1	0	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0005	1110	1	0	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0006	1110	1	0	0	1	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	c0007	1110	1	1	0	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHRS11_chr17_36586879_36605804	0/1	c0001	783	371	75	70	170	10	45	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	c0002	783	8	8	0	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	c0003	783	2	0	1	0	0	1	copy fasta	DHRS11	chr17	36586879	36605804