JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHRS11_chr17_36586879_36605804	0/0	c0004	783	2	2	0	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	c0005	783	1	1	0	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	c0006	783	1	0	1	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS12_chr13_51762993_51809163	1/0	c0001	807	326	67	40	173	14	31	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0002	807	50	24	22	0	0	4	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/1	c0003	807	35	1	15	9	2	7	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0004	807	3	1	0	0	0	2	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0005	807	1	0	1	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0006	807	1	1	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0007	807	1	0	0	1	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0008	807	1	0	1	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0009	807	1	0	0	1	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	c0010	807	1	0	1	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS13_chr17_28892781_28908079	1/0	c0001	1134	293	50	59	140	11	32	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/1	c0002	1134	58	12	9	23	1	12	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0003	1134	45	24	7	11	2	1	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0004	1134	10	8	2	0	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0005	1134	2	0	0	2	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0006	1134	2	0	0	2	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0007	1134	1	0	0	0	0	1	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	c0008	1134	1	0	1	0	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS1_chr14_24285598_24304780	1/1	c0001	942	315	56	41	169	12	35	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0002	942	47	14	23	0	4	6	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0003	942	30	16	4	7	0	3	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0004	942	9	0	0	9	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0005	942	5	0	0	5	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0006	942	3	0	0	3	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0007	942	1	1	0	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0008	942	1	1	0	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0009	942	1	0	1	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0010	942	1	0	0	1	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	c0011	942	1	0	1	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS2_chr14_23631364_23650639	1/1	c0001	843	437	92	80	196	18	49	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0002	843	2	0	0	2	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0003	843	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0004	843	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0005	833	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0006	843	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0007	843	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0008	843	1	0	0	0	0	1	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	c0009	843	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS3_chr1_12562910_12623210	1/1	c0001	909	267	64	32	129	11	29	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0002	909	78	21	14	32	4	7	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0003	909	18	5	5	0	1	7	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0004	909	8	0	6	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0005	909	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0006	909	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0007	909	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0008	909	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	c0009	909	1	0	0	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210