JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHRS4L2_chr14_23983929_24011403	1/0	c0001	699	27	0	13	2	3	8	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	c0002	699	2	0	1	0	1	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/1	c0003	699	1	0	0	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	c0004	699	1	0	1	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	c0005	699	1	0	1	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4_chr14_23948770_23974279	1/0	c0001	837	138	13	35	66	5	18	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0002	837	39	39	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0003	837	23	11	1	10	1	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0004	722	21	0	6	11	1	3	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0005	837	10	0	7	0	1	2	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0006	837	6	4	1	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0007	837	5	4	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0008	722	3	3	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0009	837	3	0	1	0	1	1	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0010	837	2	2	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0011	837	2	0	2	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0012	837	2	2	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0013	837	1	0	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0014	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0015	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0016	837	1	0	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0017	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0018	837	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0019	837	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0020	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0021	666	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0022	837	1	0	0	0	1	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0023	837	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0024	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	c0025	837	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS7B_chr17_21121964_21196420	1/1	c0001	978	368	81	61	174	12	38	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0002	978	3	2	1	0	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0003	978	3	3	0	0	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0004	978	2	0	0	2	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0005	978	2	0	0	2	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0006	978	1	1	0	0	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0007	978	1	0	0	1	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0008	978	1	1	0	0	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	c0009	978	1	0	0	1	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7C_chr17_9766438_9796592	1/1	c0001	936	338	83	64	148	10	31	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0002	936	43	6	5	21	2	9	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0003	936	14	0	3	9	1	1	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0004	936	8	5	3	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0005	936	6	0	2	0	0	4	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0006	936	4	0	0	4	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0007	936	2	0	2	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0008	936	1	0	0	0	0	1	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0009	936	1	0	0	0	1	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0010	936	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0011	936	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592