JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHRS7C_chr17_9766438_9796592	0/0	c0012	936	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0013	936	1	0	0	1	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0014	936	1	0	1	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0015	936	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	c0016	936	1	0	0	1	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7_chr14_60139119_60170398	1/1	c0001	1020	375	74	67	179	16	37	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0002	1020	4	4	0	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0003	1020	3	3	0	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0004	1020	2	0	1	0	0	1	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0005	1020	2	1	1	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0006	1020	1	0	1	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	c0007	1020	1	0	0	1	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS9_chr2_169064563_169101167	1/1	c0001	960	221	39	46	90	13	31	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0002	960	130	42	24	52	3	9	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0003	960	32	0	0	30	0	2	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0004	960	5	5	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0005	960	2	2	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0006	960	2	0	0	2	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0007	960	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0008	960	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0009	960	1	0	0	1	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0010	960	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0011	960	1	0	0	1	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	c0012	960	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRSX_chrX_2214506_2505976	0/0	c0001	993	20	4	3	10	0	3	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0002	993	9	2	2	4	1	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/1	c0003	993	4	0	2	0	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0004	993	4	3	0	0	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0005	993	2	2	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0006	993	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0007	993	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0008	993	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0009	992	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0010	994	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	1/0	c0011	993	1	0	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0012	993	1	0	0	1	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0013	993	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0014	993	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0015	993	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	c0016	993	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHTKD1_chr10_12063954_12128221	0/1	c0001	2760	152	17	27	78	4	25	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0002	2760	98	21	23	45	4	5	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0003	2760	62	17	14	29	1	1	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0004	2760	11	0	7	1	1	2	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0005	2760	7	7	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0006	2760	6	0	0	6	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0007	2760	6	6	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0008	2760	3	3	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0009	2760	3	3	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0010	2760	2	0	0	0	2	0	copy fasta	DHTKD1	chr10	12063954	12128221