JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHTKD1_chr10_12063954_12128221	0/0	c0011	2760	2	0	0	0	2	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0012	2760	2	0	0	2	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0013	2760	2	2	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	1/0	c0014	2760	2	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0015	2760	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0016	2319	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0017	2760	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0018	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0019	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0020	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0021	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0022	2760	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0023	2760	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0024	2760	1	0	0	0	0	1	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0025	2760	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0026	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0027	2760	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0028	2760	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0029	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	c0030	2760	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHX15_chr4_24522475_24589554	1/1	c0001	2388	329	77	64	140	14	32	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0002	2388	35	14	4	14	0	3	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0003	2388	2	0	0	0	0	2	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0004	2388	2	0	2	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0005	2388	1	1	0	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0006	2388	1	0	1	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0007	2388	1	0	1	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0008	2388	1	0	1	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0009	2388	1	0	0	0	0	1	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	c0010	2388	1	0	1	0	0	0	copy fasta	DHX15	chr4	24522475	24589554
DHX16_chr6_30648127_30678006	0/1	c0001	3126	357	79	58	168	11	40	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0002	3126	3	0	0	3	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0003	3126	3	0	0	0	0	3	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0004	3126	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0005	3126	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0006	3126	2	0	1	0	1	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0007	3126	2	0	0	0	2	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0008	3126	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0009	3126	2	0	2	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0010	3126	2	2	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0011	3126	1	1	0	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0012	3126	1	0	0	1	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0013	3126	1	0	0	0	1	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0014	3126	1	0	1	0	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0015	3126	1	0	0	0	0	1	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	c0016	3126	1	0	0	0	1	0	copy fasta	DHX16	chr6	30648127	30678006
DHX29_chr5_55251055_55312694	1/1	c0001	4110	238	59	43	101	9	24	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0002	4110	80	24	5	45	2	4	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0003	4110	3	0	3	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0004	4110	2	1	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694