JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHX29_chr5_55251055_55312694	0/0	c0005	4110	2	2	0	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0006	4110	2	0	0	2	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0007	4110	1	1	0	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0008	4110	1	1	0	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0009	4110	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0010	4110	1	0	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0011	4110	1	0	0	0	0	1	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0012	4110	1	0	0	0	0	1	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0013	4110	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0014	4110	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0015	4110	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0016	4110	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0017	4125	1	0	0	1	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0018	4110	1	0	0	0	1	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	c0019	4110	1	0	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX30_chr3_47798138_47855193	1/1	c0001	3585	249	65	46	91	7	38	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0002	3585	11	9	2	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0003	3585	1	0	0	1	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0004	3585	1	1	0	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0005	3585	1	1	0	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0006	3585	1	1	0	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0007	3585	1	0	0	0	1	0	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	c0008	3585	1	1	0	0	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX32_chr10_125831337_125886292	1/1	c0001	2232	223	27	34	125	9	26	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0002	2232	151	30	27	71	7	16	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0003	2232	12	12	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0004	2232	7	7	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0005	2232	5	5	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0006	2232	4	4	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0007	2232	3	0	0	3	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0008	2232	3	3	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0009	2232	2	0	0	2	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0010	2232	2	2	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0011	2232	2	0	0	0	0	2	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0012	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0013	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0014	2232	1	0	0	1	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0015	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0016	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0017	2232	1	0	0	0	0	1	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0018	2232	1	0	1	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0019	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0020	2232	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	c0021	2232	1	0	0	0	0	1	copy fasta	DHX32	chr10	125831337	125886292
DHX33_chr17_5435917_5473982	1/0	c0001	2124	120	37	33	25	4	20	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0002	2124	106	6	19	68	4	9	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0003	2124	81	20	6	43	2	10	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/1	c0004	2124	28	16	5	2	2	2	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0005	2124	11	6	3	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0006	2124	3	0	0	3	0	0	copy fasta	DHX33	chr17	5435917	5473982