JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHX33_chr17_5435917_5473982	0/0	c0007	2124	2	0	0	2	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0008	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0009	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0010	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0011	2124	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0012	2124	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0013	2124	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0014	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0015	2124	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0016	2124	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0017	2124	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0018	2124	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0019	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0020	2124	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0021	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	c0022	2124	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX34_chr19_47344315_47387704	1/0	c0001	3432	268	48	53	127	8	31	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0002	3432	32	11	8	9	2	2	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/1	c0003	3432	19	5	4	0	4	5	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0004	3432	14	0	2	11	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0005	3426	4	0	1	3	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0006	3432	4	4	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0007	3432	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0008	3432	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0009	3432	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0010	3432	3	0	3	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0011	3432	2	2	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0012	3432	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0013	3432	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0014	3432	2	0	2	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0015	3432	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0016	3432	2	0	0	0	0	2	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0017	3432	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0018	3432	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0019	3432	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0020	3432	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0021	3432	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0022	3432	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0023	3424	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0024	3432	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0025	3432	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0026	3432	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0027	3432	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0028	3432	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0029	3432	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0030	3432	1	0	0	0	0	1	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0031	3432	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0032	3432	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	c0033	3432	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX35_chr20_38957344_39044721	1/0	c0001	2112	139	42	17	59	3	17	copy fasta	DHX35	chr20	38957344	39044721