JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHX35_chr20_38957344_39044721	0/0	c0002	2112	73	11	13	43	1	5	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/1	c0003	2112	45	12	12	15	2	3	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0004	2112	5	5	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0005	2112	4	0	4	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0006	2112	4	0	0	4	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0007	2112	4	3	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0008	2112	4	0	0	4	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0009	2112	3	0	0	3	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0010	2112	2	2	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0011	2112	2	0	0	0	0	2	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0012	2112	1	1	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0013	2112	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0014	2112	1	0	0	0	0	1	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0015	2112	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	c0016	2112	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX36_chr3_154267546_154329487	1/1	c0001	3027	178	23	37	86	8	22	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0002	3027	161	33	22	88	8	10	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0003	3027	7	7	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0004	3027	5	5	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0005	3027	4	4	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0006	3027	3	3	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0007	3027	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0008	3027	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0009	3027	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0010	3027	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0011	3027	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0012	3027	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0013	3027	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	c0014	3027	1	0	1	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX37_chr12_124941826_124994131	0/0	c0001	3474	53	0	11	34	0	8	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0002	3474	51	2	14	25	3	7	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0003	3474	32	1	4	23	0	4	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0004	3474	27	0	4	17	0	6	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0005	3474	21	18	3	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0006	3474	18	17	0	0	0	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0007	3474	16	0	8	8	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0008	3474	12	3	3	3	1	2	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0009	3474	12	12	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0010	3474	11	1	3	6	1	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0011	3474	9	9	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	1/0	c0012	3474	8	0	5	0	1	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0013	3474	7	1	0	3	1	2	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0014	3474	7	7	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0015	3474	7	3	1	1	0	2	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0016	3474	6	0	3	0	2	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0017	3474	6	0	4	0	2	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0018	3474	5	0	3	0	2	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0019	3474	5	0	5	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0020	3474	3	3	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	c0021	3474	3	0	0	0	3	0	copy fasta	DHX37	chr12	124941826	124994131