JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHX38_chr16_72088847_72117912	0/0	c0012	3684	1	0	0	0	0	1	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0013	3684	1	1	0	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0014	3684	1	0	0	1	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0015	3684	1	0	0	1	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0016	3684	1	0	0	1	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0017	3684	1	0	0	1	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0018	3684	1	0	0	0	1	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0019	3684	1	1	0	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0020	3684	1	0	0	0	0	1	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	c0021	3684	1	0	0	0	0	1	copy fasta	DHX38	chr16	72088847	72117912
DHX40_chr17_59560610_59613345	0/0	c0001	2340	170	49	19	81	2	19	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	1/1	c0002	2340	130	19	25	53	12	19	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0003	2340	8	8	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0004	2340	3	3	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0005	2340	2	2	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0006	2340	2	0	0	2	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0007	2340	2	0	0	2	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0008	2340	2	2	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0009	2340	1	0	1	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0010	2340	1	0	0	1	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0011	2340	1	0	0	1	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0012	2340	1	0	1	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	c0013	2340	1	1	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX57_chr2_38792729_38880934	1/1	c0001	4161	116	42	24	34	2	12	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0002	4161	116	17	26	52	4	17	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0003	4161	7	4	3	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0004	4161	5	5	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0005	4161	5	5	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0006	4158	3	3	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0007	4161	3	0	0	0	1	2	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0008	4161	3	0	1	2	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0009	4161	3	2	0	1	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0010	4161	3	0	0	3	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0011	4161	2	1	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0012	4161	2	0	2	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0013	4161	2	2	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0014	4161	2	0	1	0	1	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0015	4161	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0016	4161	1	0	0	1	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0017	4161	1	0	0	0	0	1	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0018	4161	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0019	4161	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0020	4161	1	0	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0021	4161	1	0	0	0	0	1	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0022	4161	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0023	4161	1	0	0	0	0	1	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0024	4161	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0025	4161	1	0	0	1	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	c0026	4161	1	0	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX58_chr17_42096411_42117714	1/1	c0001	2037	169	15	44	82	7	19	copy fasta	DHX58	chr17	42096411	42117714