JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DHX58_chr17_42096411_42117714	0/0	c0002	2037	64	24	2	29	1	8	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0003	2037	57	46	2	9	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0004	2037	14	3	3	4	1	3	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0005	2037	10	1	5	0	4	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0006	2037	7	7	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0007	2037	5	0	3	0	1	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0008	2037	5	0	0	4	0	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0009	2037	5	0	0	5	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0010	2037	4	0	4	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0011	2037	3	0	1	2	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0012	2037	2	0	0	2	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0013	2037	1	0	0	1	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0014	2037	1	0	0	0	0	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0015	2037	1	0	0	0	0	1	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0016	2037	1	0	1	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0017	2037	1	1	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0018	2037	1	0	1	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	c0019	2037	1	1	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX8_chr17_43478975_43530670	1/1	c0001	3663	347	74	64	150	14	43	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0002	3663	2	2	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0003	3663	1	0	0	1	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0004	3663	1	0	0	1	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0005	3663	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0006	3663	1	0	0	0	0	1	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	c0007	3663	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX9_chr1_182834347_182892982	0/1	c0001	3813	166	40	45	55	6	19	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0002	3813	71	28	4	34	1	4	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0003	3813	10	1	8	0	1	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0004	3813	9	9	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	1/0	c0005	3813	8	5	2	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0006	3813	5	0	0	5	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0007	3813	2	1	1	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0008	3813	1	0	0	0	0	1	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0009	3813	1	1	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0010	3813	1	1	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0011	3813	1	1	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	c0012	3813	1	1	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DIABLO_chr12_122202668_122231052	1/1	c0001	720	349	59	72	163	14	39	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	c0002	720	26	26	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	c0003	720	2	0	0	0	0	2	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	c0004	720	1	0	0	1	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	c0005	720	1	0	0	0	0	1	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	c0006	720	1	1	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIAPH1_chr5_141510021_141624000	1/1	c0001	3819	282	57	55	118	15	35	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0002	3819	10	8	2	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0003	3825	9	0	2	6	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0004	3822	7	2	4	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0005	3822	6	6	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0006	3816	4	2	2	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0007	3819	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000