JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
DIAPH1_chr5_141510021_141624000	0/0	c0008	3819	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0009	3819	2	1	1	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0010	3819	2	0	0	0	0	2	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0011	3822	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0012	3819	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0013	3819	1	0	0	0	1	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0014	3819	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0015	3819	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0016	3819	1	0	0	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0017	3822	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0018	3819	1	0	0	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	c0019	3819	1	0	0	1	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH2_chrX_96679842_97609997	0/0	c0001	3306	134	28	26	59	5	16	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0002	3306	3	3	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0003	3306	3	3	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0004	3306	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0005	3306	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0006	3325	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0007	3306	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0008	3307	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0009	3306	1	0	1	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	c0010	3306	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH3_chr13_59660583_60168928	1/1	c0001	3582	135	49	19	39	3	23	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0002	3582	31	1	9	13	2	6	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0003	3582	11	2	2	5	1	1	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0004	3582	11	3	5	3	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0005	3582	4	0	0	4	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0006	3582	4	2	0	2	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0007	3582	2	0	0	0	0	2	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0008	3582	2	0	2	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0009	3582	1	0	1	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0010	3582	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0011	3582	1	0	1	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0012	3582	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0013	3582	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0014	3582	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0015	3582	1	0	1	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	c0016	3582	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DICER1_chr14_95081228_95162529	1/1	c0001	5769	258	63	45	116	10	22	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0002	5769	16	13	3	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0003	5769	7	6	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0004	5769	4	4	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0005	5769	3	3	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0006	5769	2	0	0	2	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0007	5769	2	2	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0008	5769	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0009	5769	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0010	5769	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0011	5769	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	c0012	5769	1	0	0	0	0	1	copy fasta	DICER1	chr14	95081228	95162529